5D73 | pdb_00005d73

Structure of Wuchereria bancrofti pi-class glutathione S-transferase

• PDB DOI: https://doi.org/10.2210/pdb5D73/pdb
• Entry: 5D73 supersedes: 3T2U

• Classification: TRANSFERASE
• Organism(s): Wuchereria bancrofti
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-08-13 Released: 2015-11-11 
• Deposition Author(s): Prince, P.R., Sakthidevi, M., Madhumathi, J., Perbandt, M., Betzel, C., Kaliraj, P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.33 Å
• R-Value Free: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.205 (Depositor) 

Starting Model: experimental

Literature

STRUCTURE OF WUCHERERIA BANCROFTI PI-CLASS GLUTATHIONE S-TRANSFERASE

Prince, P.R., Sakthidevi, M., Madhumathi, J., Perbandt, M., Betzel, C., Kaliraj, P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 49.15 kDa 
• Atom Count: 3,741 
• Modeled Residue Count: 414 
• Deposited Residue Count: 416 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase	A, B	208	Wuchereria bancrofti	Mutation(s): 0  EC: 2.5.1.18
UniProt
Find proteins for Q86LL8 (Wuchereria bancrofti) Explore Q86LL8  Go to UniProtKB:  Q86LL8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GSH	C [auth A], D [auth B]	GLUTATHIONE C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.33 Å
• R-Value Free:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.39	α = 90
b = 93.15	β = 90
c = 115.42	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-11 
Deposition Author(s): Prince, P.R., Sakthidevi, M., Madhumathi, J., Perbandt, M., Betzel, C., Kaliraj, P.
• This entry supersedes: 3T2U

Revision History  

• Version 1.0: 2015-11-11
  Type: Initial release
  
• Version 1.1: 2015-11-25
  Changes: Database references, Source and taxonomy, Structure summary
• Version 1.2: 2019-07-17
  Changes: Data collection
• Version 1.3: 2024-01-10
  Changes: Data collection, Database references, Refinement description