5D3A | pdb_00005d3a

KIF21A regulatory coiled coil

PDB DOI: https://doi.org/10.2210/pdb5D3A/pdb

Classification: MOTOR PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-08-06 Released: 2016-09-14
Deposition Author(s): Bianchi, S., Kraatz, S., Steinmetz, M.O., Kammerer, A.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.202 (Depositor), 0.209 (DCC)
R-Value Work:
0.175 (Depositor), 0.171 (DCC)
R-Value Observed:
0.178 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5D3A

This is version 1.1 of the entry. See complete history.

Literature

Structure of KIF21A regulatory coiled coil

Bianchi, S., Kraatz, S., Steinmetz, M.O., Kammerer, A.R.

To be published.

Macromolecule Content

Total Structure Weight: 19.17 kDa
Atom Count: 1,331
Modeled Residue Count: 164
Deposited Residue Count: 164
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kinesin-like protein KIF21A	A, B	82	Homo sapiens	Mutation(s): 0 Gene Names: KIF21A, KIAA1708, KIF2
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z4S6 (Homo sapiens) Explore Q7Z4S6 Go to UniProtKB: Q7Z4S6
PHAROS: Q7Z4S6 GTEx: ENSG00000139116
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7Z4S6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth B] MOL2 format, chain D [auth B] MOL2 format, chain C [auth B] mmCIF format, chain D [auth B] mmCIF format, chain C [auth B]	C [auth B], D [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Focus chain D [auth B] Interactions & Density Focus chain C [auth B] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.202 (Depositor), 0.209 (DCC)
R-Value Work: 0.175 (Depositor), 0.171 (DCC)
R-Value Observed: 0.178 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.02	α = 90
b = 82.02	β = 90
c = 70.57	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2016-09-14

Deposition Author(s):

Steinmetz, M.O.

Funding Organization	Location	Grant Number
	Switzerland	--

Revision History (Full details and data files)

Version 1.0: 2016-09-14
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.