Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proline dipeptidase | 349 | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | Mutation(s): 1  Gene Names: DR_1246 | ||
UniProt | |||||
Find proteins for Q9RUY4 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RUY4  Go to UniProtKB:  Q9RUY4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9RUY4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | C [auth A], D [auth A], E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MN Query on MN | B [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 60.632 | α = 90 |
b = 60.632 | β = 90 |
c = 202.824 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
REFMAC | refinement |
Coot | model building |
RESOLVE | phasing |
SOLVE | phasing |
Aimless | data scaling |
XDS | data processing |
MAR345dtb | data collection |