Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin
Kong, L.Y., Yan, L.M., Zhang, Y., Rao, Z.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Replicase polyprotein 1ab | 313 | Avian infectious bronchitis virus (strain Beaudette) | Mutation(s): 1  Gene Names: rep, 1a-1b EC: 3.4.22 (PDB Primary Data), 2.7.7.48 (PDB Primary Data), 3.6.4.12 (PDB Primary Data), 3.6.4.13 (PDB Primary Data), 3.1.13 (PDB Primary Data), 3.1 (PDB Primary Data), 2.1.1 (PDB Primary Data) | ![]() | |
UniProt | |||||
Find proteins for P0C6Y1 (Avian infectious bronchitis virus (strain Beaudette)) Explore P0C6Y1  Go to UniProtKB:  P0C6Y1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0C6Y1 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin-40S ribosomal protein S27a | 76 | Bos taurus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P62992 (Bos taurus) Explore P62992  Go to UniProtKB:  P62992 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62992 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.058 | α = 90 |
b = 74.812 | β = 90 |
c = 95.502 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China | China | 81330036 and 81322023 |
National Major Project (973 Program) | China | 2014CB542800 |
Tsinghua University Initiative Scientific Research Program | China | 20141080146 |