5BUY | pdb_00005buy

Crystal Structure of beta-hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Francisella tularensis

PDB DOI: https://doi.org/10.2210/pdb5BUY/pdb

Classification: LYASE
Organism(s): Francisella tularensis subsp. tularensis SCHU S4
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-06-04 Released: 2016-06-08
Deposition Author(s): McGillick, B., Kumaran, D., Swaminathan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.281 (Depositor), 0.287 (DCC)
R-Value Work:
0.209 (Depositor), 0.217 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of beta-hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Francisella tularensis

McGillick, B., Kumaran, D., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 119.25 kDa
Atom Count: 6,560
Modeled Residue Count: 830
Deposited Residue Count: 1,068
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	A, B, C, D, E A, B, C, D, E, F	178	Francisella tularensis subsp. tularensis SCHU S4	Mutation(s): 0 Gene Names: fabZ, FTT_1570c EC: 4.2.1.59
UniProt
Find proteins for Q5NEQ0 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NEQ0 Go to UniProtKB: Q5NEQ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5NEQ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth D] MOL2 format, chain G [auth A] MOL2 format, chain H [auth D] mmCIF format, chain G [auth A] mmCIF format, chain H [auth D]	G [auth A], H [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth D] Interactions & Density Focus chain G [auth A] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.281 (Depositor), 0.287 (DCC)
R-Value Work: 0.209 (Depositor), 0.217 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 136.709	α = 90
b = 56.029	β = 113
c = 140.089	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-06-08

Deposition Author(s):

Swaminathan, S.

Revision History (Full details and data files)

Version 1.0: 2016-06-08
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.