Download MendeleyNucleotide binding to variants of the HSP70-NBD.
Narayanan, D., Pflug, A., Christopeit, T., Kyomuhendo, P., Engh, R.A.To be published.
5BN8
Crystal structure of nucleotide-free human Hsp70 NBD.
- PDB DOI: https://doi.org/10.2210/pdb5BN8/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-05-25 Released: 2016-09-14
- Funding Organization(s): FRINAT
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.34 Å
- R-Value Free: 0.154
- R-Value Work: 0.131
- R-Value Observed: 0.132
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Heat shock 70 kDa protein 1A | 388 | Homo sapiens | Mutation(s): 0 Gene Names: HSPA1A, HSPA1, HSX70 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0DMV8 (Homo sapiens) Explore P0DMV8 Go to UniProtKB: P0DMV8 | |||||
PHAROS: P0DMV8 GTEx: ENSG00000204389 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DMV8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | B [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | E [auth A], F [auth A], G [auth A], H [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CL Query on CL | I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| NA Query on NA | J [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.34 Å
- R-Value Free: 0.154
- R-Value Work: 0.131
- R-Value Observed: 0.132
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.129 | α = 90 |
| b = 63.7 | β = 90 |
| c = 144.118 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Coot | model building |
| MOLREP | phasing |
| Aimless | data scaling |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-09-14 Deposition Author(s): Narayanan, D., Engh, R.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| FRINAT | Norway | 191303 |
Revision History (Full details and data files)
- Version 1.0: 2016-09-14
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description
