5B7I

Cas3-AcrF3 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 

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Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

Structural basis of Cas3 inhibition by the bacteriophage protein AcrF3

Wang, X.Yao, D.Xu, J.G.Li, A.R.Xu, J.Fu, P.Zhou, Y.Zhu, Y.

(2016) Nat Struct Mol Biol 23: 868-870

  • DOI: https://doi.org/10.1038/nsmb.3269
  • Primary Citation of Related Structures:  
    5B7I

  • PubMed Abstract: 

    Bacteriophages express proteins that inactivate the CRISPR-Cas bacterial immune system. Here we report the crystal structure of the anti-CRISPR protein AcrF3 in complex with Pseudomonas aeruginosa Cas3 (PaCas3). AcrF3 forms a homodimer that locks PaCas3 in an ADP-bound form, blocks the entrance of the DNA-binding tunnel in the helicase domain, and masks the linker region and C-terminal domain of PaCas3, thereby preventing recruitment by Cascade and inhibiting the type I-F CRISPR-Cas system.


  • Organizational Affiliation

    Life Sciences Institute and Innovation Center for Cell Signaling Network, Zhejiang University, Hangzhou, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST1,082Pseudomonas aeruginosa UCBPP-PA14Mutation(s): 0 
Gene Names: cas3PA14_33340
EC: 3.1 (PDB Primary Data), 3.6.4 (PDB Primary Data)
UniProt
Find proteins for Q02ML8 (Pseudomonas aeruginosa (strain UCBPP-PA14))
Explore Q02ML8 
Go to UniProtKB:  Q02ML8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02ML8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein AcrF3
B, C
153Pseudomonas phage JBD5Mutation(s): 0 
UniProt
Find proteins for L7P7R7 (Pseudomonas phage JBD5)
Explore L7P7R7 
Go to UniProtKB:  L7P7R7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL7P7R7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.304α = 90
b = 127.197β = 90
c = 218.455γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81322024
National Natural Science Foundation of ChinaChina81561130162
National Natural Science Foundation of ChinaChina31370722
National Natural Science Foundation of ChinaChina81530068
National Natural Science Foundation of ChinaChina81501717
Natural Science Foundation of Zhejiang province, ChinaChinaLR13C05001

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-06
    Type: Initial release
  • Version 1.1: 2016-08-10
    Changes: Database references
  • Version 1.2: 2016-09-21
    Changes: Database references
  • Version 1.3: 2017-10-04
    Changes: Data collection, Derived calculations
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Derived calculations, Structure summary