5B1R

Crystal structure of mouse CD72a CTLD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.128 
  • R-Value Observed: 0.129 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

CD72 negatively regulates B lymphocyte responses to the lupus-related endogenous toll-like receptor 7 ligand Sm/RNP

Akatsu, C.Shinagawa, K.Numoto, N.Liu, Z.Ucar, A.K.Aslam, M.Phoon, S.Adachi, T.Furukawa, K.Ito, N.Tsubata, T.

(2016) J Exp Med 213: 2691-2706

  • DOI: https://doi.org/10.1084/jem.20160560
  • Primary Citation of Related Structures:  
    5B1R

  • PubMed Abstract: 

    Toll-like receptor 7 (TLR7) plays an essential role in development of systemic lupus erythematosus by co-stimulating B cells reactive to the endogenous TLR7 ligand Sm/ribonucleoprotein (RNP), a crucial lupus self-antigen. However, how the TLR7-mediated autoimmune response is regulated is not yet known. In this study, we demonstrate that CD72, an inhibitory B cell co-receptor known to prevent development of lupus, recognizes Sm/RNP at the extracellular C-type lectin-like domain (CTLD) and specifically inhibits B cell response to Sm/RNP. Moreover, the CTLD of CD72 c , a lupus-susceptible allele, binds to Sm/RNP less strongly than that of lupus-resistant CD72 a Reduced binding of CD72 c is supported by x-ray crystallographic analysis that reveals a considerable alteration in charge at the putative ligand-binding site. Thus, CD72 appears to specifically inhibit B cell response to the endogenous TLR7 ligand Sm/RNP through CTLD-mediated recognition of Sm/RNP, thereby preventing production of anti-Sm/RNP antibody crucial for development of lupus.


  • Organizational Affiliation

    Department of Immunology, Medical Research Institute, Tokyo Medical and Dental University, Bunkyo, Tokyo 113-8510, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
B-cell differentiation antigen CD72127Mus musculusMutation(s): 2 
Gene Names: Cd72Ly-32Ly32Lyb-2
UniProt
Find proteins for P21855 (Mus musculus)
Explore P21855 
Go to UniProtKB:  P21855
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21855
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.128 
  • R-Value Observed: 0.129 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.472α = 90
b = 65.472β = 90
c = 61.22γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
PHASERphasing
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-19
    Type: Initial release
  • Version 1.1: 2016-11-23
    Changes: Database references
  • Version 1.2: 2016-11-30
    Changes: Database references
  • Version 1.3: 2020-02-26
    Changes: Data collection, Database references
  • Version 1.4: 2023-11-08
    Changes: Data collection, Database references, Refinement description
  • Version 1.5: 2024-10-23
    Changes: Structure summary