4ZW0 | pdb_00004zw0

Crystal structure of beta-Hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Candidatus asiaticum

• PDB DOI: https://doi.org/10.2210/pdb4ZW0/pdb

• Classification: LYASE
• Organism(s): Candidatus Liberibacter asiaticus str. psy62
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-05-19 Released: 2015-12-16 
• Deposition Author(s): Wang, S., Gao, Z., Jiang, L., Dong, Y.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 
  0.284 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.231 (Depositor) 

Literature

Beta-Hydroxyacyl-acyl Carrier Protein Dehydratase (FabZ) from Candidatus Liberibacter Asiaticum: Protein Characterization and Structural Modeling

Wang, S., Gao, Z., LI, Y., Jiang, L., Dong, Y.H.

(2015) Austin J Microbiol 1

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 55.06 kDa 
• Atom Count: 3,426 
• Modeled Residue Count: 428 
• Deposited Residue Count: 483 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	A, B, C	161	Candidatus Liberibacter asiaticus str. psy62	Mutation(s): 0  Gene Names: fabZ, CLIBASIA_03305 EC: 4.2.1.59
UniProt
Find proteins for C6XFU0 (Liberibacter asiaticus (strain psy62)) Explore C6XFU0  Go to UniProtKB:  C6XFU0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free:  0.284 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.231 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.346	α = 90
b = 75.346	β = 90
c = 353.236	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-12-16 
Deposition Author(s): Wang, S., Gao, Z., Jiang, L., Dong, Y.H.

Revision History  

• Version 1.0: 2015-12-16
  Type: Initial release
  
• Version 1.1: 2016-11-09
  Changes: Database references
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references, Derived calculations