Download MendeleyCrystal structure of DNMT1 in complex with USP7
Zhang, Z.M., Song, J.To be published.
4Z96
Crystal structure of DNMT1 in complex with USP7
- PDB DOI: https://doi.org/10.2210/pdb4Z96/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-04-09 Released: 2016-10-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.246
- R-Value Work: 0.201
- R-Value Observed: 0.204
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin carboxyl-terminal hydrolase 7 | 530 | Homo sapiens | Mutation(s): 0 Gene Names: USP7, HAUSP EC: 3.4.19.12 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q93009 (Homo sapiens) Explore Q93009 Go to UniProtKB: Q93009 | |||||
PHAROS: Q93009 GTEx: ENSG00000187555 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93009 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA (cytosine-5)-methyltransferase 1 | B [auth C] | 33 | Homo sapiens | Mutation(s): 0 Gene Names: DNMT1, AIM, CXXC9, DNMT EC: 2.1.1.37 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P26358 (Homo sapiens) Explore P26358 Go to UniProtKB: P26358 | |||||
PHAROS: P26358 GTEx: ENSG00000130816 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P26358 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.246
- R-Value Work: 0.201
- R-Value Observed: 0.204
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 124.044 | α = 90 |
| b = 124.044 | β = 90 |
| c = 153.014 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Coot | model building |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-10-12 Deposition Author(s): Zhang, Z.M., Song, J.
Revision History (Full details and data files)
- Version 1.0: 2016-10-12
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
