4Y6I | pdb_00004y6i

Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation

PDB DOI: https://doi.org/10.2210/pdb4Y6I/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-02-13 Released: 2015-09-23
Deposition Author(s): Tanaka, T., Matsuura, Y., Yutani, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.200 (Depositor), 0.201 (DCC)
R-Value Work:
0.171 (Depositor), 0.170 (DCC)
R-Value Observed:
0.172 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4Y6I

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation

Tanaka, T., Matsuura, Y., Yutani, K.

To be published.

Macromolecule Content

Total Structure Weight: 70.36 kDa
Atom Count: 5,592
Modeled Residue Count: 629
Deposited Residue Count: 648
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Divalent-cation tolerance protein CutA	A, B, C, D, E A, B, C, D, E, F	108	Escherichia coli K-12	Mutation(s): 4 Gene Names: cutA, cutA1, cycY, b4137, JW4097
UniProt
Find proteins for P69488 (Escherichia coli (strain K12)) Explore P69488 Go to UniProtKB: P69488
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P69488
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.200 (Depositor), 0.201 (DCC)
R-Value Work: 0.171 (Depositor), 0.170 (DCC)
R-Value Observed: 0.172 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.72	α = 90
b = 127.72	β = 90
c = 38.201	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SCALEPACK	data scaling
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-09-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-09-23
Type: Initial release
Version 1.1: 2020-02-05
Changes: Data collection, Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.