4X39 | pdb_00004x39

Gallus interleukin-1 beta mutant - T117A

PDB DOI: https://doi.org/10.2210/pdb4X39/pdb

Classification: IMMUNE SYSTEM
Organism(s): Gallus gallus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-11-28 Released: 2015-12-09
Deposition Author(s): Yin, H.S., Cheng, W.T.
Funding Organization(s): Ministry of Science and Technology

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free:
0.237 (Depositor), 0.226 (DCC)
R-Value Work:
0.200 (Depositor), 0.211 (DCC)
R-Value Observed:
0.202 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Gallus interleukin-1 beta mutant - T117A

Yin, H.S., Cheng, W.T.

To be published.

Macromolecule Content

Total Structure Weight: 18.87 kDa
Atom Count: 1,252
Modeled Residue Count: 155
Deposited Residue Count: 168
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IL-1 beta	A	168	Gallus gallus	Mutation(s): 1 Gene Names: il-1beta, IL1B, IL1beta
UniProt
Find proteins for O73909 (Gallus gallus) Explore O73909 Go to UniProtKB: O73909
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O73909
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free: 0.237 (Depositor), 0.226 (DCC)
R-Value Work: 0.200 (Depositor), 0.211 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.613	α = 90
b = 38.509	β = 90
c = 102.04	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data scaling

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2015-12-09

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology	Taiwan	103-2311-B-007 -003 -MY3

Revision History (Full details and data files)

Version 1.0: 2015-12-09
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.