4WCY | pdb_00004wcy

Fab fragment of mouse AZ130 monoclonal antibody

• PDB DOI: https://doi.org/10.2210/pdb4WCY/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2014-09-05 Released: 2015-09-23 
• Deposition Author(s): Fallecker, C., Tarbouriech, N., Habib, M., Crepin, T., Drouet, E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.224 (Depositor), 0.231 (DCC) 
• R-Value Work: 
  0.172 (Depositor), 0.183 (DCC) 
• R-Value Observed: 
  0.175 (Depositor) 

Starting Model: experimental

Literature

Fab fragment of mouse AZ130 monoclonal antibody

Fallecker, C., Tarbouriech, N., Habib, M., Crepin, T., Drouet, E.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 47.73 kDa 
• Atom Count: 3,599 
• Modeled Residue Count: 427 
• Deposited Residue Count: 438 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AZ130 Heavy chain	A [auth H]	220	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
AZ130 Light chain	B [auth L]	218	Mus musculus	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth H]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	C [auth H], D [auth H], F [auth L]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.224 (Depositor), 0.231 (DCC) 
• R-Value Work:  0.172 (Depositor), 0.183 (DCC) 
• R-Value Observed: 0.175 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.157	α = 90
b = 68.825	β = 90
c = 113.042	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
REFMAC	refinement
XSCALE	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-09-23 
Deposition Author(s): Fallecker, C., Tarbouriech, N., Habib, M., Crepin, T., Drouet, E.

Revision History  

• Version 1.0: 2015-09-23
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-11-13
  Changes: Structure summary