4WBS | pdb_00004wbs

Crystal structure of an ABC transporter related protein from Burkholderia phymatum

PDB DOI: https://doi.org/10.2210/pdb4WBS/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Paraburkholderia phymatum STM815
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-09-03 Released: 2014-09-24
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.237 (Depositor), 0.240 (DCC)
R-Value Work:
0.183 (Depositor), 0.189 (DCC)
R-Value Observed:
0.186 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of an ABC transporter related protein from Burkholderia phymatum

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Clifton, M.C., Sankaran, B., Lorimer, D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 61.2 kDa
Atom Count: 4,017
Modeled Residue Count: 503
Deposited Residue Count: 564
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ABC transporter related	A, B	282	Paraburkholderia phymatum STM815	Mutation(s): 0 Gene Names: Bphy_0327
UniProt
Find proteins for B2JCQ1 (Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)) Explore B2JCQ1 Go to UniProtKB: B2JCQ1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B2JCQ1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.237 (Depositor), 0.240 (DCC)
R-Value Work: 0.183 (Depositor), 0.189 (DCC)
R-Value Observed: 0.186 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.07	α = 90
b = 79.85	β = 90
c = 121.14	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
BALBES	phasing
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-09-24

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2014-09-24
Type: Initial release
Version 1.1: 2015-02-04
Changes: Derived calculations
Version 1.2: 2017-11-22
Changes: Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.