4W8S | pdb_00004w8s

Crystal structure of truncated hemolysin A Q125S/Y134S from P. mirabilis at 1.5 Angstroms resolution

PDB DOI: https://doi.org/10.2210/pdb4W8S/pdb

Classification: TOXIN
Organism(s): Proteus mirabilis
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-08-26 Released: 2015-10-07
Deposition Author(s): Novak, W.R.P., Glasgow, E., Thompson, J.R., Weaver, T.M.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free:
0.201 (Depositor), 0.202 (DCC)
R-Value Work:
0.176 (Depositor), 0.179 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
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This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of truncated hemolysin A Q125S/Y134S from P. mirabilis at 1.5 Angstroms resolution

Novak, W.R.P., Glasgow, E., Thompson, J.R., Weaver, T.M.

To be published.

Macromolecule Content

Total Structure Weight: 25.36 kDa
Atom Count: 2,059
Modeled Residue Count: 234
Deposited Residue Count: 242
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemolysin	A	242	Proteus mirabilis	Mutation(s): 2 Gene Names: hpmA
UniProt
Find proteins for P16466 (Proteus mirabilis) Explore P16466 Go to UniProtKB: P16466
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P16466
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free: 0.201 (Depositor), 0.202 (DCC)
R-Value Work: 0.176 (Depositor), 0.179 (DCC)
R-Value Observed: 0.177 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.338	α = 90
b = 120.153	β = 90
c = 34.01	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2015-10-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	MCB1050435

Revision History (Full details and data files)

Version 1.0: 2015-10-07
Type: Initial release
Version 1.1: 2017-06-21
Changes: Structure summary
Version 1.2: 2017-09-20
Changes: Author supporting evidence
Version 1.3: 2019-11-27
Changes: Author supporting evidence
Version 1.4: 2023-09-27
Changes: Data collection, Database references, Refinement description
Version 1.5: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.