4W66 | pdb_00004w66

Crystal structure of Glutathione S-transferase domain protein from Haliangium ochraceum DSM 14365

• PDB DOI: https://doi.org/10.2210/pdb4W66/pdb

• Classification: TRANSFERASE
• Organism(s): Haliangium ochraceum DSM 14365
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-08-20 Released: 2014-09-03 
• Deposition Author(s): Chang, C., Chhor, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.36 Å
• R-Value Free: 
  0.238 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.201 (DCC) 
• R-Value Observed: 
  0.189 (Depositor) 

Literature

Crystal structure of Glutathione S-transferase domain protein from Haliangium ochraceum DSM 14365

Chang, C., Chhor, G., Clancy, S., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 54.94 kDa 
• Atom Count: 3,751 
• Modeled Residue Count: 456 
• Deposited Residue Count: 486 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase domain protein	A, B	243	Haliangium ochraceum DSM 14365	Mutation(s): 0  Gene Names: Hoch_6316
UniProt
Find proteins for D0LNW1 (Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)) Explore D0LNW1  Go to UniProtKB:  D0LNW1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GSH	C [auth A], D [auth B]	Glutathione C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Biologically Interesting Molecules (External Reference) 

1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002593 (GSH)	C [auth A], D [auth B]	Glutathione	Peptide-like / Oxidation-reduction

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.36 Å
• R-Value Free:  0.238 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.201 (DCC) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.4	α = 90
b = 130.4	β = 90
c = 70.147	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
SBC-Collect	data collection
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data scaling
Coot	model building
HKL-3000	phasing
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-09-03 
Deposition Author(s): Chang, C., Chhor, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2014-09-03
  Type: Initial release
  
• Version 1.1: 2023-12-27
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy