4UZR | pdb_00004uzr

Crystal Structure of Pyrococcus horikoshii Ph1500

PDB DOI: https://doi.org/10.2210/pdb4UZR/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pyrococcus horikoshii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-09-08 Released: 2015-10-07
Deposition Author(s): Hartmann, M.D., Ammelburg, M., Djuranovic, S., Lupas, A.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.252 (Depositor), 0.263 (DCC)
R-Value Work:
0.200 (Depositor), 0.211 (DCC)
R-Value Observed:
0.202 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Pyrococcus Horikoshii Ph1500

Ammelburg, M., Schiff, J., Hartmann, M.D., Varnay, I., Djuranovic, S., Truffault, V., Martin, J., Coles, M., Lupas, A.N.

To be published.

Macromolecule Content

Total Structure Weight: 97.98 kDa
Atom Count: 6,526
Modeled Residue Count: 852
Deposited Residue Count: 858
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PUTATIVE UNCHARACTERIZED PROTEIN PH1500	A, B, C, D, E A, B, C, D, E, F	143	Pyrococcus horikoshii	Mutation(s): 0
UniProt
Find proteins for O59169 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59169 Go to UniProtKB: O59169
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O59169
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.252 (Depositor), 0.263 (DCC)
R-Value Work: 0.200 (Depositor), 0.211 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.779	α = 90
b = 184.169	β = 90
c = 172.142	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-10-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-10-07
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection, Experimental preparation, Other
Version 1.2: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.