4RXG | pdb_00004rxg

Fructose-6-phosphate aldolase Q59E from E.coli

PDB DOI: https://doi.org/10.2210/pdb4RXG/pdb

Classification: LYASE
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli DH5[alpha]
Mutation(s): Yes

Deposited: 2014-12-11 Released: 2015-10-07
Deposition Author(s): Stellmacher, L., Sandalova, T., Leptihn, S., Schneider, G., Sprenger, G.A., Samland, A.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.228 (Depositor), 0.231 (DCC)
R-Value Work:
0.189 (Depositor), 0.196 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Acid Base Catalyst Discriminates between a Fructose 6-Phosphate Aldolase and a Transaldolase

Stellmacher, L., Sandalova, T., Leptihn, S., Schneider, G., Sprenger, G.A., Samland, A.K.

(2015) ChemCatChem

DOI: https://doi.org/10.1002/cctc.201500478

Macromolecule Content

Total Structure Weight: 232.26 kDa
Atom Count: 17,105
Modeled Residue Count: 2,200
Deposited Residue Count: 2,200
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-6-phosphate aldolase 1	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	220	Escherichia coli K-12	Mutation(s): 1 Gene Names: b0825, fsa, fsaA, JW5109, mipB, ybiZ EC: 4.1.2
UniProt
Find proteins for P78055 (Escherichia coli (strain K12)) Explore P78055 Go to UniProtKB: P78055
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P78055
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download:Ideal Coordinates CCD File SDF format, chain BA [auth I] MOL2 format, chain BA [auth I] mmCIF format, chain BA [auth I]	BA [auth I]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain BA [auth I] Interactions & Density Focus chain BA [auth I]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain CA [auth J] SDF format, chain DA [auth J] SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain M [auth B] SDF format, chain O [auth C] SDF format, chain P [auth C] SDF format, chain Q [auth D] SDF format, chain R [auth D] SDF format, chain Y [auth H] SDF format, chain Z [auth I] SDF format, chain X [auth H] SDF format, chain W [auth G] SDF format, chain V [auth F] SDF format, chain U [auth F] SDF format, chain T [auth E] SDF format, chain S [auth E] SDF format, chain N [auth B] SDF format, chain EA [auth J] SDF format, chain AA [auth I] MOL2 format, chain CA [auth J] MOL2 format, chain DA [auth J] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth B] MOL2 format, chain O [auth C] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth D] MOL2 format, chain R [auth D] MOL2 format, chain Y [auth H] MOL2 format, chain Z [auth I] MOL2 format, chain X [auth H] MOL2 format, chain W [auth G] MOL2 format, chain V [auth F] MOL2 format, chain U [auth F] MOL2 format, chain T [auth E] MOL2 format, chain S [auth E] MOL2 format, chain N [auth B] MOL2 format, chain EA [auth J] MOL2 format, chain AA [auth I] mmCIF format, chain CA [auth J] mmCIF format, chain DA [auth J] mmCIF format, chain K [auth A] mmCIF format, chain L [auth A] mmCIF format, chain M [auth B] mmCIF format, chain O [auth C] mmCIF format, chain P [auth C] mmCIF format, chain Q [auth D] mmCIF format, chain R [auth D] mmCIF format, chain Y [auth H] mmCIF format, chain Z [auth I] mmCIF format, chain X [auth H] mmCIF format, chain W [auth G] mmCIF format, chain V [auth F] mmCIF format, chain U [auth F] mmCIF format, chain T [auth E] mmCIF format, chain S [auth E] mmCIF format, chain N [auth B] mmCIF format, chain EA [auth J] mmCIF format, chain AA [auth I]	AA [auth I] CA [auth J] DA [auth J] EA [auth J] K [auth A] AA [auth I], CA [auth J], DA [auth J], EA [auth J], K [auth A], L [auth A], M [auth B], N [auth B], O [auth C], P [auth C], Q [auth D], R [auth D], S [auth E], T [auth E], U [auth F], V [auth F], W [auth G], X [auth H], Y [auth H], Z [auth I]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth I] Focus chain CA [auth J] Focus chain DA [auth J] Focus chain EA [auth J] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth H] Focus chain Z [auth I] Interactions & Density Focus chain AA [auth I] Focus chain CA [auth J] Focus chain DA [auth J] Focus chain EA [auth J] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth C] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth H] Focus chain Z [auth I]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.228 (Depositor), 0.231 (DCC)
R-Value Work: 0.189 (Depositor), 0.196 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.436	α = 90
b = 126.748	β = 90
c = 183.448	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-10-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-10-07
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.2: 2024-11-27
Changes: Structure summary