4RS4 | pdb_00004rs4

Crystal structure and mutational analysis of the endoribonuclease from human coronavirus 229E

PDB DOI: https://doi.org/10.2210/pdb4RS4/pdb

Classification: HYDROLASE
Organism(s): Human coronavirus 229E
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-11-06 Released: 2015-11-11
Deposition Author(s): Huo, T., Liu, X., Yang, C., Rao, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.96 Å
R-Value Free:
0.255 (Depositor), 0.240 (DCC)
R-Value Work:
0.208 (Depositor), 0.194 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure and mutational analysis of the endoribonuclease from human coronavirus 229E

Huo, T., Liu, X., Yang, C., Rao, Z.

To be published.

Macromolecule Content

Total Structure Weight: 233.4 kDa
Atom Count: 15,989
Modeled Residue Count: 2,042
Deposited Residue Count: 2,094
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uridylate-specific endoribonuclease	A, B, C, D, E A, B, C, D, E, F	349	Human coronavirus 229E	Mutation(s): 4 Gene Names: rep, 1a-1b EC: 3.1
UniProt
Find proteins for P0C6X1 (Human coronavirus 229E) Explore P0C6X1 Go to UniProtKB: P0C6X1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C6X1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.96 Å
R-Value Free: 0.255 (Depositor), 0.240 (DCC)
R-Value Work: 0.208 (Depositor), 0.194 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.931	α = 90
b = 143.168	β = 90
c = 174.662	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-11-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-11-11
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.