4RPE | pdb_00004rpe

Crystal Structure of Variant G186E from Pseudomonas Aeruginosa Lipoxygenase 2 at 1.60A (C2)

PDB DOI: https://doi.org/10.2210/pdb4RPE/pdb

Classification: OXIDOREDUCTASE
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-10-30 Released: 2015-11-04
Deposition Author(s): Carpena, X., Garreta, A., Herrero, L., Fita, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.272 (Depositor), 0.275 (DCC)
R-Value Work:
0.227 (Depositor), 0.235 (DCC)
R-Value Observed:
0.229 (Depositor)

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Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Lipoxygenase 2 in space group C2

Carpena, X., Garreta, A., Herrero, L., Fita, I.

To be published.

Macromolecule Content

Total Structure Weight: 75.87 kDa
Atom Count: 5,785
Modeled Residue Count: 658
Deposited Residue Count: 688
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Linoleate 9/13-lipoxygenase	A	688	Pseudomonas aeruginosa	Mutation(s): 1 Gene Names: lox EC: 1.13.11 (PDB Primary Data), 1.13.11.58 (PDB Primary Data), 1.13.11.77 (PDB Primary Data), 1.13.11.12 (UniProt)
UniProt
Find proteins for Q8RNT4 (Pseudomonas aeruginosa) Explore Q8RNT4 Go to UniProtKB: Q8RNT4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8RNT4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
8PE Query on 8PE Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate C₃₇ H₇₄ N O₈ P RFJQNULIDFTTLL-PGUFJCEWSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
FE2 Query on FE2 Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.272 (Depositor), 0.275 (DCC)
R-Value Work: 0.227 (Depositor), 0.235 (DCC)
R-Value Observed: 0.229 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.63	α = 90
b = 96.88	β = 107.22
c = 87.32	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-11-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-11-04
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.