4R9Z | pdb_00004r9z

Mycobacterium avium subs paratuberculosis tesB protein MAP1729c

PDB DOI: https://doi.org/10.2210/pdb4R9Z/pdb

Classification: HYDROLASE
Organism(s): Mycobacterium avium subsp. paratuberculosis K-10
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-09-08 Released: 2014-10-08
Deposition Author(s): Swarbrick, C.M.D., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.258 (Depositor), 0.250 (DCC)
R-Value Work:
0.202 (Depositor), 0.200 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Mycobacterium avium subs paratuberculosis tesB protein MAP1729c

Swarbrick, C.M.D., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 60.95 kDa
Atom Count: 3,884
Modeled Residue Count: 493
Deposited Residue Count: 556
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	278	Mycobacterium avium subsp. paratuberculosis K-10	Mutation(s): 0 Gene Names: MAP_1729c
UniProt
Find proteins for Q73Z74 (Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)) Explore Q73Z74 Go to UniProtKB: Q73Z74
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q73Z74
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.258 (Depositor), 0.250 (DCC)
R-Value Work: 0.202 (Depositor), 0.200 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.23	α = 90
b = 70.11	β = 90
c = 137.93	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-10-08

Deposition Author(s):

Swarbrick, C.M.D.

Revision History (Full details and data files)

Version 1.0: 2014-10-08
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.