Crystal Structure of 5-Carboxyvanillate Decarboxylase from Novosphingobium Aromaticivorans
Patskovsky, Y., Vladimirova, A., Toro, R., Bhosle, R., Raushel, F.M., Almo, S.C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
5-Carboxyvanillate Decarboxylase | 373 | Novosphingobium aromaticivorans DSM 12444 | Mutation(s): 0  Gene Names: Saro_0799 | ![]() | |
UniProt | |||||
Find proteins for Q2GA79 (Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199)) Explore Q2GA79  Go to UniProtKB:  Q2GA79 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2GA79 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1DF Query on 1DF | F [auth A], N [auth B], R [auth C], X [auth D] | 4-hydroxy-3-methoxy-5-nitrobenzoic acid C8 H7 N O6 AEDVAGWYAKIOIM-UHFFFAOYSA-N | |||
GOL Query on GOL | G [auth A] H [auth A] O [auth B] S [auth C] T [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | L [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
MN Query on MN | E [auth A], M [auth B], Q [auth C], W [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CL Query on CL | AA [auth D] I [auth A] J [auth A] K [auth A] P [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 92.723 | α = 90 |
b = 60.747 | β = 103.33 |
c = 130.517 | γ = 90 |
Software Name | Purpose |
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PHASER | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |