4QIV | pdb_00004qiv

Crystal structure of hexameric microcomparment shell protein from Aeromonas hydrophila

PDB DOI: https://doi.org/10.2210/pdb4QIV/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Aeromonas hydrophila subsp. hydrophila ATCC 7966
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-02 Released: 2015-08-12
Deposition Author(s): Pang, A.H., Sawaya, M.R., Yeates, T.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.275 (Depositor), 0.281 (DCC)
R-Value Work:
0.221 (Depositor), 0.228 (DCC)
R-Value Observed:
0.224 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a hexameric microcomparment protein from Aeromonas hydrophila

Pang, A.H., Sawaya, M.R., Yeates, T.O.

To be published.

Macromolecule Content

Total Structure Weight: 35.33 kDa
Atom Count: 1,858
Modeled Residue Count: 258
Deposited Residue Count: 342
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterial microcompartments family protein	A, B, C	114	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Mutation(s): 0 Gene Names: AHA_1335
UniProt
Find proteins for A0KHX4 (Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)) Explore A0KHX4 Go to UniProtKB: A0KHX4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0KHX4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.275 (Depositor), 0.281 (DCC)
R-Value Work: 0.221 (Depositor), 0.228 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: F 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.46	α = 90
b = 115.21	β = 90
c = 122.35	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-08-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-08-12
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.