4Q5R | pdb_00004q5r

Crystal Structure of Glutathione S-transferase Bla g 5

PDB DOI: https://doi.org/10.2210/pdb4Q5R/pdb

Classification: TRANSFERASE
Organism(s): Blattella germanica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-04-17 Released: 2015-04-01
Deposition Author(s): Pedersen, L.C., Mueller, G.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å
R-Value Free:
0.245 (Depositor), 0.247 (DCC)
R-Value Work:
0.205 (Depositor), 0.208 (DCC)
R-Value Observed:
0.206 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Glutathione S-transferase Bla g 5

Pedersen, L.C., Mueller, G.A.

To be published.

Macromolecule Content

Total Structure Weight: 144.59 kDa
Atom Count: 10,023
Modeled Residue Count: 1,196
Deposited Residue Count: 1,224
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase	A B [auth C] C [auth D] D [auth B] E [auth F] A, B [auth C], C [auth D], D [auth B], E [auth F], F [auth E]	204	Blattella germanica	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for O18598 (Blattella germanica) Explore O18598 Go to UniProtKB: O18598
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O18598
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH Query on GSH Download:Ideal Coordinates CCD File SDF format, chain X [auth E] SDF format, chain W [auth F] SDF format, chain V [auth F] SDF format, chain U [auth F] SDF format, chain S [auth B] SDF format, chain R [auth B] SDF format, chain Q [auth B] SDF format, chain N [auth D] SDF format, chain L [auth C] SDF format, chain K [auth C] SDF format, chain I [auth A] SDF format, chain H [auth A] SDF format, chain G [auth A] MOL2 format, chain X [auth E] MOL2 format, chain W [auth F] MOL2 format, chain V [auth F] MOL2 format, chain U [auth F] MOL2 format, chain S [auth B] MOL2 format, chain R [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain N [auth D] MOL2 format, chain L [auth C] MOL2 format, chain K [auth C] MOL2 format, chain I [auth A] MOL2 format, chain H [auth A] MOL2 format, chain G [auth A] mmCIF format, chain X [auth E] mmCIF format, chain W [auth F] mmCIF format, chain V [auth F] mmCIF format, chain U [auth F] mmCIF format, chain S [auth B] mmCIF format, chain R [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain N [auth D] mmCIF format, chain L [auth C] mmCIF format, chain K [auth C] mmCIF format, chain I [auth A] mmCIF format, chain H [auth A] mmCIF format, chain G [auth A]	G [auth A] H [auth A] I [auth A] K [auth C] L [auth C] G [auth A], H [auth A], I [auth A], K [auth C], L [auth C], N [auth D], Q [auth B], R [auth B], S [auth B], U [auth F], V [auth F], W [auth F], X [auth E]	Glutathione C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth E] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth E]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain T [auth B] SDF format, chain O [auth D] SDF format, chain M [auth C] SDF format, chain J [auth A] MOL2 format, chain T [auth B] MOL2 format, chain O [auth D] MOL2 format, chain M [auth C] MOL2 format, chain J [auth A] mmCIF format, chain T [auth B] mmCIF format, chain O [auth D] mmCIF format, chain M [auth C] mmCIF format, chain J [auth A]	J [auth A], M [auth C], O [auth D], T [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain M [auth C] Focus chain O [auth D] Focus chain T [auth B] Interactions & Density Focus chain J [auth A] Focus chain M [auth C] Focus chain O [auth D] Focus chain T [auth B]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain P [auth D] MOL2 format, chain P [auth D] mmCIF format, chain P [auth D]	P [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain P [auth D] Interactions & Density Focus chain P [auth D]

Biologically Interesting Molecules (External Reference)

1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002593 (GSH) Query on PRD_002593	G [auth A] H [auth A] I [auth A] K [auth C] L [auth C] G [auth A], H [auth A], I [auth A], K [auth C], L [auth C], N [auth D], Q [auth B], R [auth B], S [auth B], U [auth F], V [auth F], W [auth F], X [auth E]	Glutathione	Peptide-like / Oxidation-reduction		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth E] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain U [auth F] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å
R-Value Free: 0.245 (Depositor), 0.247 (DCC)
R-Value Work: 0.205 (Depositor), 0.208 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.063	α = 90
b = 102.379	β = 90
c = 165.765	γ = 90

Software Package:

Software Name	Purpose
SERGUI	data collection
MLPHARE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2015-04-01

Deposition Author(s):

Pedersen, L.C.

Mueller, G.A.

Revision History (Full details and data files)

Version 1.0: 2015-04-01
Type: Initial release
Version 1.1: 2025-03-26
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary