4PVI

Crystal structure of GH62 hydrolase in complex with xylotriose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.130 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Crystal structure of GH62 hydrolase in complex with xylotriose

Kaur, A.P.Nocek, B.Xu, X.Lowden, M.J.Leyva, J.F.Stogios, P.J.Cui, H.Leo, R.D.Powlowski, J.Tsang, A.Savchenko, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GH62 hydrolase342Mycothermus thermophilusMutation(s): 0 
UniProt
Find proteins for A0A059U759 (Mycothermus thermophilus)
Explore A0A059U759 
Go to UniProtKB:  A0A059U759
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A059U759
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
B
3N/A
Glycosylation Resources
GlyTouCan:  G87429QT
GlyCosmos:  G87429QT
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.130 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.445α = 90
b = 72.445β = 90
c = 62.099γ = 120
Software Package:
Software NamePurpose
SBC-Collectdata collection
MOLREPphasing
CCP4model building
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
CCP4phasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-09-24
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
  • Version 2.1: 2023-09-20
    Changes: Data collection, Database references, Refinement description, Structure summary