4PE6 | pdb_00004pe6

Crystal structure of ABC transporter solute binding protein from Thermobispora bispora DSM 43833

• PDB DOI: https://doi.org/10.2210/pdb4PE6/pdb

• Classification: SOLUTE-BINDING PROTEIN
• Organism(s): Thermobispora bispora DSM 43833
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-04-22 Released: 2014-05-07 
• Deposition Author(s): Chang, C., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.86 Å
• R-Value Free: 
  0.218 (Depositor), 0.225 (DCC) 
• R-Value Work: 
  0.182 (Depositor), 0.196 (DCC) 
• R-Value Observed: 
  0.184 (Depositor) 

Literature

Crystal structure of ABC transporter solute binding protein from Thermobispora bispora DSM 43833

Chang, C., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 72.79 kDa 
• Atom Count: 5,216 
• Modeled Residue Count: 646 
• Deposited Residue Count: 682 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ABC transporter	A, B	341	Thermobispora bispora DSM 43833	Mutation(s): 0  Gene Names: Tbis_1193
UniProt
Find proteins for D6Y8L8 (Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / KCTC 9307 / NBRC 14880 / R51)) Explore D6Y8L8  Go to UniProtKB:  D6Y8L8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
LTH	C [auth A], D [auth B]	(2R,3S)-2,3,4-trihydroxybutanoic acid C4 H8 O5 JPIJQSOTBSSVTP-STHAYSLISA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.86 Å
• R-Value Free:  0.218 (Depositor), 0.225 (DCC) 
• R-Value Work:  0.182 (Depositor), 0.196 (DCC) 
• R-Value Observed: 0.184 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.724	α = 90
b = 77.375	β = 90.37
c = 79.472	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-05-07 
Deposition Author(s): Chang, C., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2014-05-07
  Type: Initial release
  
• Version 1.1: 2015-02-04
  Changes: Derived calculations
• Version 1.2: 2017-11-22
  Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-11-13
  Changes: Structure summary