4NLH | pdb_00004nlh

SKICH domain of human TAX1BP1

• PDB DOI: https://doi.org/10.2210/pdb4NLH/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-11-14 Released: 2014-12-24 
• Deposition Author(s): Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.278 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.241 (Depositor) 

Literature

SKICH domain of human TAX1BP1

Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 31.41 kDa 
• Atom Count: 2,067 
• Modeled Residue Count: 225 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tax1-binding protein 1	A, B	138	Homo sapiens	Mutation(s): 0  Gene Names: HUMAN TAX1BP1, PRO0105, T6BP, TAX1BP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q86VP1 (Homo sapiens) Explore Q86VP1  Go to UniProtKB:  Q86VP1
PHAROS:  Q86VP1 GTEx:  ENSG00000106052

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.278 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.241 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.16	α = 90
b = 64.02	β = 90
c = 101.68	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-12-24 
Deposition Author(s): Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

Revision History  

• Version 1.0: 2014-12-24
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references