4NF7 | pdb_00004nf7

Crystal structure of the GH5 family catalytic domain of Endo-1,4-beta-glucanase Cel5C from Butyrivibrio proteoclasticus.

PDB DOI: https://doi.org/10.2210/pdb4NF7/pdb

Classification: HYDROLASE
Organism(s): Butyrivibrio proteoclasticus B316
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-10-30 Released: 2014-11-05
Deposition Author(s): Lott, J.S., Colbert, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free:
0.233 (Depositor), 0.226 (DCC)
R-Value Work:
0.190 (Depositor), 0.187 (DCC)
R-Value Observed:
0.192 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4NF7

This is version 1.3 of the entry. See complete history.

Literature

Structural and functional characterisation of endo-1,4-beta-glucanase Cel5C from bovine rumen microbe Butyrivibrio proteoclasticus

Lott, J.S., Colbert, D.A.

To be published.

Macromolecule Content

Total Structure Weight: 41.53 kDa
Atom Count: 3,016
Modeled Residue Count: 363
Deposited Residue Count: 363
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endo-1,4-beta-glucanase Cel5C	A	363	Butyrivibrio proteoclasticus B316	Mutation(s): 0 Gene Names: bpr_I1710, cel5C EC: 3.2.1.4
UniProt
Find proteins for E0RXM0 (Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316)) Explore E0RXM0 Go to UniProtKB: E0RXM0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E0RXM0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.233 (Depositor), 0.226 (DCC)
R-Value Work: 0.190 (Depositor), 0.187 (DCC)
R-Value Observed: 0.192 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.89	α = 90
b = 68.89	β = 90
c = 175.64	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-11-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-11-05
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2019-12-04
Changes: Data collection, Database references
Version 1.3: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.