4MUP | pdb_00004mup

Crystal structure of Agrobacterium tumefaciens ATU3138 (EFI target 505157), apo structure

• PDB DOI: https://doi.org/10.2210/pdb4MUP/pdb

• Classification: HYDROLASE
• Organism(s): Agrobacterium fabrum str. C58
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2013-09-23 Released: 2014-01-29 
• Deposition Author(s): Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.181 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.147 (Depositor), 0.149 (DCC) 
• R-Value Observed: 
  0.149 (Depositor) 

Starting Models: experimental

Literature

Crystal structure of Agrobacterium tumefaciens ATU3138 (EFI target 505157), apo structure

Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Imker, H.J., Gerlt, J.A., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 102.59 kDa 
• Atom Count: 7,599 
• Modeled Residue Count: 842 
• Deposited Residue Count: 936 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AMIDOHYDROLASE	A, B, C	312	Agrobacterium fabrum str. C58	Mutation(s): 0  Gene Names: Atu3138 EC: 5.4.1.4
UniProt
Find proteins for A9CEQ7 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CEQ7  Go to UniProtKB:  A9CEQ7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.181 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.147 (Depositor), 0.149 (DCC) 
• R-Value Observed: 0.149 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.202	α = 90
b = 77.557	β = 95.49
c = 99.714	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-01-29 
Deposition Author(s): Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Revision History  

• Version 1.0: 2014-01-29
  Type: Initial release
  
• Version 1.1: 2023-09-20
  Changes: Data collection, Database references, Refinement description