4MO3 | pdb_00004mo3

Crystal Structure of Porcine C2 Domain of Blood Coagulation Factor VIII

PDB DOI: https://doi.org/10.2210/pdb4MO3/pdb

Classification: BLOOD CLOTTING
Organism(s): Sus scrofa
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2013-09-11 Released: 2013-11-06
Deposition Author(s): Spiegel, P.C., Brison, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.209 (Depositor), 0.210 (DCC)
R-Value Work:
0.175 (Depositor), 0.176 (DCC)
R-Value Observed:
0.179 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Porcine C2 Domain of Blood Coagulation Factor VIII (FoldIt Target)

Spiegel, P.C., Brison, C.

To be published.

Macromolecule Content

Total Structure Weight: 20 kDa
Atom Count: 1,442
Modeled Residue Count: 156
Deposited Residue Count: 177
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coagulation factor VIII	A [auth M]	177	Sus scrofa	Mutation(s): 0 Gene Names: F8, CF8 Membrane Entity: Yes
UniProt
Find proteins for P12263 (Sus scrofa) Explore P12263 Go to UniProtKB: P12263
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12263
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth M] MOL2 format, chain B [auth M] mmCIF format, chain B [auth M]	B [auth M]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth M] Interactions & Density Focus chain B [auth M]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.209 (Depositor), 0.210 (DCC)
R-Value Work: 0.175 (Depositor), 0.176 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.07	α = 90
b = 68.94	β = 90
c = 105.96	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
Coot	model building
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-11-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-11-06
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.3: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.