4M6N | pdb_00004m6n

Crystal structure of anti-IL-23 antibody CNTO1959 at pH 6.5

PDB DOI: https://doi.org/10.2210/pdb4M6N/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2013-08-09 Released: 2014-08-13
Deposition Author(s): Teplyakov, A., Obmolova, G., Gilliland, G.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.230 (Depositor), 0.199 (DCC)
R-Value Work:
0.180 (Depositor)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

crystal structure of anti-IL-23 antibody CNTO1959 at pH 6.5

Teplyakov, A., Obmolova, G., Gilliland, G.L.

To be published.

Macromolecule Content

Total Structure Weight: 47.37 kDa
Atom Count: 3,616
Modeled Residue Count: 429
Deposited Residue Count: 443
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CNTO1959 light chain	A [auth L]	217	Homo sapiens	Mutation(s): 0

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
CNTO1959 heavy chain	B [auth H]	226	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMT Query on FMT Download:Ideal Coordinates CCD File SDF format, chain D [auth H] SDF format, chain C [auth H] MOL2 format, chain D [auth H] MOL2 format, chain C [auth H] mmCIF format, chain D [auth H] mmCIF format, chain C [auth H]	C [auth H], D [auth H]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain C [auth H] Focus chain D [auth H] Interactions & Density Focus chain C [auth H] Focus chain D [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.230 (Depositor), 0.199 (DCC)
R-Value Work: 0.180 (Depositor)
R-Value Observed: 0.182 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.59	α = 90
b = 92.05	β = 90
c = 92.82	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-08-13

Deposition Author(s):

Gilliland, G.L.

Revision History (Full details and data files)

Version 1.0: 2014-08-13
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.2: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.