4KYX | pdb_00004kyx

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

PDB DOI: https://doi.org/10.2210/pdb4KYX/pdb

Classification: HYDROLASE
Organism(s): Rickettsia felis URRWXCal2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-05-29 Released: 2013-08-07
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.256 (Depositor), 0.250 (DCC)
R-Value Work:
0.213 (Depositor)
R-Value Observed:
0.215 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

Abendroth, J., Clifton, M.C., Lorimer, D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 35.05 kDa
Atom Count: 2,417
Modeled Residue Count: 273
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribose pyrophosphatase MutT	A, B	149	Rickettsia felis URRWXCal2	Mutation(s): 0 Gene Names: mutT, RF_0595 EC: 3.6.1
UniProt
Find proteins for Q4ULX7 (Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)) Explore Q4ULX7 Go to UniProtKB: Q4ULX7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4ULX7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.256 (Depositor), 0.250 (DCC)
R-Value Work: 0.213 (Depositor)
R-Value Observed: 0.215 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.98	α = 90
b = 63.78	β = 90
c = 71.72	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
XDS	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-08-07

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2013-08-07
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.