Download MendeleyCrystall structute of the business end of the T4 cell-puncturing device
Buth, S.A., Leiman, P.G., Shneider, M.M.To be published.
4KU0
Enterobacteria phage T4 gp5.4 PAAR repeat protein in complex with T4 gp5 beta-helix fragment
- PDB DOI: https://doi.org/10.2210/pdb4KU0/pdb
- Classification: HYDROLASE/PROTEIN BINDING
- Organism(s): Tequatrovirus T4
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-05-21 Released: 2014-05-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.171
- R-Value Observed: 0.127
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tail-associated lysozyme | 96 | Tequatrovirus T4 | Mutation(s): 0 Gene Names: 5 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P16009 (Enterobacteria phage T4) Explore P16009 Go to UniProtKB: P16009 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P16009 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized 10.2 kDa protein in segC-Gp6 intergenic region | 96 | Tequatrovirus T4 | Mutation(s): 0 Gene Names: 5.4, y08B |  | |
UniProt | |||||
Find proteins for P39234 (Enterobacteria phage T4) Explore P39234 Go to UniProtKB: P39234 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39234 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STE Query on STE | H [auth B] | STEARIC ACID C18 H36 O2 QIQXTHQIDYTFRH-UHFFFAOYSA-N |  | ||
| ELA Query on ELA | F [auth A] | 9-OCTADECENOIC ACID C18 H34 O2 ZQPPMHVWECSIRJ-MDZDMXLPSA-N |  | ||
| PLM Query on PLM | I [auth C] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | G [auth A], J [auth C], M [auth D], N [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FE Query on FE | K [auth D] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| NA Query on NA | L [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.171
- R-Value Observed: 0.127
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.302 | α = 90 |
| b = 49.327 | β = 96.19 |
| c = 84.057 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| SHELXL-97 | refinement |
| XDS | data reduction |
| XDS | data scaling |
Entry History
Deposition Data
- Released Date: 2014-05-21 Deposition Author(s): Buth, S.A., Leiman, P.G., Shneider, M.M.
Revision History (Full details and data files)
- Version 1.0: 2014-05-21
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
