4KM9 | pdb_00004km9

Crystal structure of human Suppressor of Fused


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 
    0.305 (Depositor), 0.329 (DCC) 
  • R-Value Work: 
    0.243 (Depositor) 
  • R-Value Observed: 
    0.246 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4KM9

This is version 1.4 of the entry. See complete history

Literature

Structural insight into the mutual recognition and regulation between Suppressor of Fused and Gli/Ci.

Zhang, Y.Fu, L.Qi, X.Zhang, Z.Xia, Y.Jia, J.Jiang, J.Zhao, Y.Wu, G.

(2013) Nat Commun 4: 2608-2608

  • DOI: https://doi.org/10.1038/ncomms3608
  • Primary Citation Related Structures: 
    4KM8, 4KM9, 4KMA, 4KMD, 4KMH

  • PubMed Abstract: 

    Hedgehog (Hh) signalling regulates embryonic development and adult tissue homoeostasis. Mutations of its pathway components including Suppressor of Fused (Sufu) and Gli/Ci predispose to cancers and congenital anomalies. The Sufu-Gli protein complex occupies a central position in the vertebrate Hh signalling pathway, especially in mammals. Here structures of full-length human and Drosophila Sufu, the human Sufu-Gli complex, along with normal mode analysis and FRET measurement results, reveal that Sufu alternates between 'open' and 'closed' conformations. The 'closed' form of Sufu is stabilized by Gli binding and inhibited by Hh treatment, whereas the 'open' state of Sufu is promoted by Gli-dissociation and Hh signalling. Mutations of critical interface residues disrupt the Sufu-Gli complex and prevent Sufu from repressing Gli-mediated transcription, tethering Gli in the cytoplasm and protecting Gli from the 26S proteasome-mediated degradation. Our study thus provides mechanistic insight into the mutual recognition and regulation between Sufu and Gli/Ci.


  • Organizational Affiliation
    • 1] State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China [2].

Macromolecule Content 

  • Total Structure Weight: 54.45 kDa 
  • Atom Count: 2,988 
  • Modeled Residue Count: 382 
  • Deposited Residue Count: 489 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Suppressor of fused homolog489Homo sapiensMutation(s): 0 
Gene Names: SUFUUNQ650/PRO1280
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UMX1 (Homo sapiens)
Explore Q9UMX1 
Go to UniProtKB:  Q9UMX1
PHAROS:  Q9UMX1
GTEx:  ENSG00000107882 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UMX1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free:  0.305 (Depositor), 0.329 (DCC) 
  • R-Value Work:  0.243 (Depositor) 
  • R-Value Observed: 0.246 (Depositor) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.875α = 90
b = 120.94β = 90
c = 117.653γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-11-20
    Type: Initial release
  • Version 1.1: 2013-11-27
    Changes: Experimental preparation
  • Version 1.2: 2014-02-12
    Changes: Database references
  • Version 1.3: 2017-11-15
    Changes: Refinement description
  • Version 1.4: 2023-11-08
    Changes: Data collection, Database references, Refinement description