4KK2 | pdb_00004kk2

Crystal structure of a chimeric FPP/GFPP synthase (TARGET EFI-502313c) from Artemisia spiciformiS (1-72:GI751454468,73-346:GI75233326), apo structure

PDB DOI: https://doi.org/10.2210/pdb4KK2/pdb

Classification: TRANSFERASE
Organism(s): Artemisia spiciformis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-05-05 Released: 2013-06-19
Deposition Author(s): Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Poulter, C.D., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.199 (Depositor), 0.214 (DCC)
R-Value Work:
0.157 (Depositor)
R-Value Observed:
0.159 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a chimeric FPP/GFPP synthase (TARGET EFI-502313c) from Artemisia spiciformis (1-72:GI751454468,73-346:GI75233326), apo structure

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Poulter, C.D., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published.

Macromolecule Content

Total Structure Weight: 84.3 kDa
Atom Count: 5,732
Modeled Residue Count: 674
Deposited Residue Count: 732
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoterpene synthase FDS-5, chloroplastic - Farnesyl diphosphate synthase 1 chimera	A, B	366	Artemisia spiciformis	Mutation(s): 0 Gene Names: FDS-5, FDS-1 EC: 2.5.1.67 (PDB Primary Data), 2.5.1.1 (PDB Primary Data), 2.5.1.69 (PDB Primary Data), 2.5.1.10 (PDB Primary Data)
UniProt
Find proteins for Q7XYS8 (Artemisia spiciformis) Explore Q7XYS8 Go to UniProtKB: Q7XYS8
Find proteins for Q7XYS9 (Artemisia spiciformis) Explore Q7XYS9 Go to UniProtKB: Q7XYS9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q7XYS8 Q7XYS9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.199 (Depositor), 0.214 (DCC)
R-Value Work: 0.157 (Depositor)
R-Value Observed: 0.159 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.145	α = 90
b = 122.145	β = 90
c = 114.282	γ = 120

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
AMoRE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-06-19

Deposition Author(s):

Enzyme Function Initiative (EFI)

Revision History (Full details and data files)

Version 1.0: 2013-06-19
Type: Initial release
Version 1.1: 2017-08-16
Changes: Refinement description, Source and taxonomy
Version 1.2: 2018-01-24
Changes: Database references
Version 1.3: 2018-01-31
Changes: Structure summary
Version 1.4: 2023-09-20
Changes: Data collection, Database references, Refinement description