4JYL

Crystal structure of enoyl-CoA hydratase from Thermoplasma volcanium GSS1

• PDB DOI: https://doi.org/10.2210/pdb4JYL/pdb

• Classification: LYASE
• Organism(s): Thermoplasma volcanium GSS1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2013-03-29 Released: 2013-04-17 
• Deposition Author(s): Shabalin, I.G., Cooper, D.R., Majorek, K.A., Mikolajczak, K., Porebski, P.J., Stead, M., Hillerich, B.S., Ahmed, M., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.37 Å
• R-Value Free: 0.191 
• R-Value Work: 0.157 
• R-Value Observed: 0.159 

Literature

Crystal structure of enoyl-CoA hydratase from Thermoplasma volcanium GSS1

Shabalin, I.G., Cooper, D.R., Majorek, K.A., Mikolajczak, K., Porebski, P.J., Stead, M., Hillerich, B.S., Ahmed, M., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 177.15 kDa 
• Atom Count: 11,997 
• Modelled Residue Count: 1,479 
• Deposited Residue Count: 1,590 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase	A, B, C, D, E, F	265	Thermoplasma volcanium GSS1	Mutation(s): 0  Gene Names: 1441684, TV0198 EC: 4.2.1.17
UniProt
Find proteins for Q97CA4 (Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)) Explore Q97CA4  Go to UniProtKB:  Q97CA4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	H [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
CL	G [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D, E, F	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.37 Å
• R-Value Free: 0.191 
• R-Value Work: 0.157 
• R-Value Observed: 0.159 
• Space Group: P 1 2₁ 1
• Diffraction Data: https://doi.org/10.18430/M33017

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.102	α = 90
b = 117.229	β = 91.43
c = 91.505	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data collection
SHELX	phasing
MLPHARE	phasing
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-17 
Deposition Author(s): Shabalin, I.G., Cooper, D.R., Majorek, K.A., Mikolajczak, K., Porebski, P.J., Stead, M., Hillerich, B.S., Ahmed, M., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History  

• Version 1.0: 2013-04-17
  Type: Initial release
  
• Version 1.1: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.2: 2024-11-20
  Changes: Data collection, Refinement description, Structure summary