4JG9 | pdb_00004jg9

X-ray Crystal Structure of a Putative Lipoprotein from Bacillus anthracis

PDB DOI: https://doi.org/10.2210/pdb4JG9/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Bacillus anthracis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-02-28 Released: 2013-03-20
Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Onopriyenko, O., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free:
0.210 (Depositor), 0.212 (DCC)
R-Value Work:
0.175 (Depositor), 0.183 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4JG9

This is version 1.1 of the entry. See complete history.

Literature

X-ray Crystal Structure of a Putative Lipoprotein from Bacillus anthracis

Brunzelle, J.S., Wawrzak, Z., Onopriyenko, O., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases

To be published.

Macromolecule Content

Total Structure Weight: 39.51 kDa
Atom Count: 2,303
Modeled Residue Count: 278
Deposited Residue Count: 348
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipoprotein	A, B	174	Bacillus anthracis	Mutation(s): 0 Gene Names: BA_0580, BAS0549, GBAA_0580
UniProt
Find proteins for A0A6L7HR41 (Bacillus anthracis) Explore A0A6L7HR41 Go to UniProtKB: A0A6L7HR41
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6L7HR41
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free: 0.210 (Depositor), 0.212 (DCC)
R-Value Work: 0.175 (Depositor), 0.183 (DCC)
R-Value Observed: 0.176 (Depositor)

Diffraction Data:

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.863	α = 90
b = 85.863	β = 90
c = 236.078	γ = 120

Software Package:

Software Name	Purpose
BLU-MAX	data collection
PHENIX	model building
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-03-20

Deposition Author(s):

Brunzelle, J.S.

Onopriyenko, O.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2013-03-20
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.