4IT7 | pdb_00004it7

Crystal structure of Al-CPI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.257 (Depositor), 0.252 (DCC) 
  • R-Value Work: 
    0.203 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 
    0.203 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4IT7

This is version 1.2 of the entry. See complete history

Literature

Structural Basis for the Immunomodulatory Function of Cysteine Protease Inhibitor from Human Roundworm Ascaris lumbricoides.

Mei, G.Dong, J.Li, Z.Liu, S.Liu, Y.Sun, M.Liu, G.Su, Z.Liu, J.

(2014) PLoS One 9: e96069-e96069

  • DOI: https://doi.org/10.1371/journal.pone.0096069
  • Primary Citation Related Structures: 
    4IT7

  • PubMed Abstract: 

    Immunosuppression associated with infections of nematode parasites has been documented. Cysteine protease inhibitor (CPI) released by the nematode parasites is identified as one of the major modulators of host immune response. In this report, we demonstrated that the recombinant CPI protein of Ascaris lumbricoides (Al-CPI) strongly inhibited the activities of cathepsin L, C, S, and showed weaker effect to cathepsin B. Crystal structure of Al-CPI was determined to 2.1 Å resolution. Two segments of Al-CPI, loop 1 and loop 2, were proposed as the key structure motifs responsible for Al-CPI binding with proteases and its inhibitory activity. Mutations at loop 1 and loop 2 abrogated the protease inhibition activity to various extents. These results provide the molecular insight into the interaction between the nematode parasite and its host and will facilitate the development of anthelmintic agents or design of anti-autoimmune disease drugs.


  • Organizational Affiliation
    • State Key Laboratory of Respiratory Disease, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China; School of Life Sciences, University of Science and Technology of China, Hefei, China.

Macromolecule Content 

  • Total Structure Weight: 48.18 kDa 
  • Atom Count: 3,346 
  • Modeled Residue Count: 428 
  • Deposited Residue Count: 452 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CPI
A, B, C, D
113Ascaris lumbricoidesMutation(s): 0 
Gene Names: cpi
UniProt
Find proteins for E9N3T6 (Ascaris lumbricoides)
Explore E9N3T6 
Go to UniProtKB:  E9N3T6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9N3T6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.257 (Depositor), 0.252 (DCC) 
  • R-Value Work:  0.203 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.51α = 90
b = 44.499β = 89.99
c = 44.582γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-29
    Type: Initial release
  • Version 1.1: 2014-06-11
    Changes: Database references
  • Version 1.2: 2024-11-20
    Changes: Data collection, Database references, Structure summary