4HTV | pdb_00004htv

Mouse importin alpha: BFDV Cap NLS peptide complex

PDB DOI: https://doi.org/10.2210/pdb4HTV/pdb

Classification: PROTEIN TRANSPORT/VIRAL PROTEIN
Organism(s): Mus musculus, Beak and feather disease virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-11-01 Released: 2012-11-28
Deposition Author(s): Patterson, E.I., Forwood, J.K., Raidal, S.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.228 (Depositor), 0.230 (DCC)
R-Value Work:
0.173 (Depositor), 0.174 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Mouse importin alpha: BFDV Cap NLS peptide complex

Patterson, E.I., Forwood, J.K., Raidal, S.R.

To be published.

Macromolecule Content

Total Structure Weight: 59.51 kDa
Atom Count: 3,332
Modeled Residue Count: 434
Deposited Residue Count: 538
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin subunit alpha-2	A	509	Mus musculus	Mutation(s): 0 Gene Names: Kpna2, Rch1
UniProt & NIH Common Fund Data Resources
Find proteins for P52293 (Mus musculus) Explore P52293 Go to UniProtKB: P52293
IMPC: MGI:103561
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P52293
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
capsid protein	B	29	Beak and feather disease virus	Mutation(s): 0
UniProt
Find proteins for Q68SX0 (Beak and feather disease virus) Explore Q68SX0 Go to UniProtKB: Q68SX0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q68SX0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.228 (Depositor), 0.230 (DCC)
R-Value Work: 0.173 (Depositor), 0.174 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.2	α = 90
b = 89.9	β = 90
c = 99.16	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
Coot	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2012-11-28

Deposition Author(s):

Patterson, E.I.

Revision History (Full details and data files)

Version 1.0: 2012-11-28
Type: Initial release
Version 1.1: 2012-12-05
Changes: Database references, Structure summary
Version 1.2: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.