4GPD | pdb_00004gpd

THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION

PDB DOI: https://doi.org/10.2210/pdb4GPD/pdb
Entry: 4GPD supersedes: 2GPD

Classification: OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A))
Organism(s): Homarus americanus
Mutation(s): No

Deposited: 1988-01-04 Released: 1989-07-12
Deposition Author(s): Griffith, J.P., Song, S., Rossmann, M.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Work:
0.230 (DCC)
R-Value Observed:
0.218 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Structure of lobster apo-D-glyceraldehyde-3-phosphate dehydrogenase at 3.0 A resolution.

Murthy, M.R., Garavito, R.M., Johnson, J.E., Rossmann, M.G.

(1980) J Mol Biology 138: 859-872

PubMed: 7411626 Search on PubMed
DOI: https://doi.org/10.1016/0022-2836(80)90069-8
Primary Citation Related Structures:
4GPD

Macromolecule Content

Total Structure Weight: 143.03 kDa
Atom Count: 10,150
Modeled Residue Count: 1,332
Deposited Residue Count: 1,332
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	A [auth 1], B [auth 2], C [auth 3], D [auth 4]	333	Homarus americanus	Mutation(s): 0 EC: 1.2.1.12
UniProt
Find proteins for P00357 (Homarus americanus) Explore P00357 Go to UniProtKB: P00357
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00357
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Work: 0.230 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.019	α = 110.85
b = 80.956	β = 71.47
c = 82.545	γ = 116.86

Software Package:

Software Name	Purpose
PROLSQ	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 1989-07-12

Deposition Author(s):

This entry supersedes: 2GPD

Revision History (Full details and data files)

Version 1.0: 1989-07-12
Type: Initial release
Version 1.1: 2008-03-03
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-28
Changes: Data collection, Database references, Other

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