4F15 | pdb_00004f15

Molecular basis of infectivity of 2009 pandemic H1N1 influenza A viruses

PDB DOI: https://doi.org/10.2210/pdb4F15/pdb

Classification: IMMUNE SYSTEM
Organism(s): Influenza A virus (A/Korea/01/2009(H1N1)), Mus musculus
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2012-05-06 Released: 2013-05-15
Deposition Author(s): Kim, K.H., Cho, K.J., Lee, J.H., Park, Y.H., Khan, T.G., Lee, J.Y., Kang, S.H., Alam, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free:
0.289 (Depositor), 0.293 (DCC)
R-Value Work:
0.233 (Depositor), 0.236 (DCC)
R-Value Observed:
0.235 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4F15

This is version 1.2 of the entry. See complete history.

Literature

Molecular basis of infectivity of 2009 pandemic H1N1 influenza A viruses

Kim, K.H., Cho, K.J., Lee, J.H., Park, Y.H., Khan, T.G., Lee, J.Y., Kang, S.H., Alam, I., Hong, K.W., Kim, S.H., Unzai, S., Park, S.Y., Kim, C.J., Lee, J.Y., Khan, C., Oh, H.B., Chung, M.S.

To be published.

Macromolecule Content

Total Structure Weight: 421.06 kDa
Atom Count: 19,900
Modeled Residue Count: 2,606
Deposited Residue Count: 3,820
Unique protein chains: 3

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A, D, G, J	518	Influenza A virus (A/Korea/01/2009(H1N1))	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for C5MQE6 (Influenza A virus) Explore C5MQE6 Go to UniProtKB: C5MQE6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C5MQE6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab fragment, heavy chain	B, E, H, K	219	Mus musculus	Mutation(s): 0

Find similar proteins by:

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab fragment, light chain	C, F, I, L	218	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free: 0.289 (Depositor), 0.293 (DCC)
R-Value Work: 0.233 (Depositor), 0.236 (DCC)
R-Value Observed: 0.235 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.698	α = 90
b = 90.127	β = 90.05
c = 238.179	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-05-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-05-15
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.