4F0L

Crystal structure of Amidohydrolase from Brucella melitensis

• PDB DOI: https://doi.org/10.2210/pdb4F0L/pdb

• Classification: HYDROLASE
• Organism(s): Brucella abortus 2308
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-05-04 Released: 2012-07-25 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.184 
• R-Value Work: 0.148 
• R-Value Observed: 0.150 

Starting Model: experimental

Literature

Crystal structure of Amidohydrolase from Brucella melitensis

Gardberg, A.S., Abendroth, J., Staker, B., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 99.13 kDa 
• Atom Count: 7,416 
• Modelled Residue Count: 897 
• Deposited Residue Count: 916 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amidohydrolase	A, B	458	Brucella abortus 2308	Mutation(s): 0  Gene Names: BAB2_0307
UniProt
Find proteins for Q2YIL4 (Brucella abortus (strain 2308)) Explore Q2YIL4  Go to UniProtKB:  Q2YIL4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE	C [auth A], E [auth B]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N
FMT	D [auth A], F [auth B]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.184 
• R-Value Work: 0.148 
• R-Value Observed: 0.150 
• Space Group: P 1
• Diffraction Data: https://doi.org/10.18430/M34F0L

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.592	α = 92.75
b = 62.192	β = 95.49
c = 68.926	γ = 112.32

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-07-25 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2012-07-25
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Refinement description
• Version 1.2: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description