Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor G4
Deng, L., Langley, R.J., Wang, Q., Topalian, S.L., Mariuzza, R.A.(2012) Proc Natl Acad Sci U S A 
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
(2012) Proc Natl Acad Sci U S A 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
T cell receptor G4 alpha chain | 203 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
T cell receptor G4 beta chain | 239 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NO3 Query on NO3 | F [auth B], L [auth D] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] G [auth B] H [auth B] I [auth B] J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | K [auth B], Q [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 168.07 | α = 90 |
b = 75.365 | β = 123.48 |
c = 130.859 | γ = 90 |
Software Name | Purpose |
---|---|
ADSC | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |