4D4W | pdb_00004d4w

Solution structure of human MBD1 CXXC1 domain

PDB DOI: https://doi.org/10.2210/pdb4D4W/pdb
BMRB: 25312

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-10-31 Released: 2015-09-23
Deposition Author(s): Thomson, R., Smith, B.O.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 25
Selection Criteria: NOE ENERGY

wwPDB Validation 3D Report Full Report

Validation slider image for 4D4W

This is version 2.1 of the entry. See complete history.

Literature

Solution Structure of Human Mbd1 Cxxc1.

Thomson, R., Smith, B.O.

(2015) J Biomol NMR 63: 309-314

PubMed: 26354109 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1007/s10858-015-9986-8
Primary Citation Related Structures:
4D4W

Organizational Affiliation

Institute of Molecular Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, Joseph Black Building, University of Glasgow, Glasgow, G12 8QQ, UK.

Macromolecule Content

Total Structure Weight: 6.69 kDa
Atom Count: 458
Modeled Residue Count: 61
Deposited Residue Count: 61
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
METHYL-CPG-BINDING DOMAIN PROTEIN 1	A	61	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UIS9 (Homo sapiens) Explore Q9UIS9 Go to UniProtKB: Q9UIS9
PHAROS: Q9UIS9 GTEx: ENSG00000141644
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UIS9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 25
Selection Criteria: NOE ENERGY

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-09-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-09-23
Type: Initial release
Version 1.1: 2015-11-25
Changes: Database references
Version 1.2: 2018-01-24
Changes: Data collection, Database references
Version 2.0: 2019-10-23
Changes: Atomic model, Data collection, Other
Version 2.1: 2024-05-15
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.