4CAU | pdb_00004cau

THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH 2 HMAB 14C10 FAB


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

The Structural Basis for Serotype-Specific Neutralization of Dengue Virus by a Human Antibody.

Teoh, E.P.Kukkaro, P.Teo, E.W.Lim, A.P.C.Tan, T.T.Yip, A.Schul, W.Aung, M.Kostyuchenko, V.A.Leo, Y.S.Chan, S.H.Smith, K.G.C.Chan, A.H.Y.Zou, G.Ooi, E.E.Kemeny, D.M.Tan, G.K.Ng, J.K.W.Ng, M.L.Alonso, S.Fisher, D.Shi, P.Hanson, B.J.Lok, S.Macary, P.A.

(2012) Sci Transl Med 4: 9RA83

  • DOI: https://doi.org/10.1126/scitranslmed.3003888
  • Primary Citation Related Structures: 
    3J05, 4CAU

  • PubMed Abstract: 

    Dengue virus (DENV) is a mosquito-borne flavivirus that affects 2.5 billion people worldwide. There are four dengue serotypes (DENV1 to DENV4), and infection with one elicits lifelong immunity to that serotype but offers only transient protection against the other serotypes. Identification of the protective determinants of the human antibody response to DENV is a vital requirement for the design and evaluation of future preventative therapies and treatments. Here, we describe the isolation of a neutralizing antibody from a DENV1-infected patient. The human antibody 14c10 (HM14c10) binds specifically to DENV1. HM14c10 neutralizes the virus principally by blocking virus attachment; at higher concentrations, a post-attachment step can also be inhibited. In vivo studies show that the HM14c10 antibody has antiviral activity at picomolar concentrations. A 7 Å resolution cryoelectron microscopy map of Fab fragments of HM14c10 in a complex with DENV1 shows targeting of a discontinuous epitope that spans the adjacent surface of envelope protein dimers. As found previously, a human antibody specific for the related West Nile virus binds to a similar quaternary structure, suggesting that this could be an immunodominant epitope. These findings provide a structural and molecular context for durable, serotype-specific immunity to DENV infection.


  • Organizational Affiliation
    • Department of Microbiology and Life Sciences Institute Immunology Programme, National University of Singapore, Singapore 117597, Singapore.

Macromolecule Content 

  • Total Structure Weight: 181.47 kDa 
  • Atom Count: 1,588 
  • Modeled Residue Count: 1,588 
  • Deposited Residue Count: 1,660 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ENVELOPE PROTEIN E
A, B, C
400dengue virus type 1Mutation(s): 0 
UniProt
Find proteins for Q689G3 (Dengue virus type 1)
Explore Q689G3 
Go to UniProtKB:  Q689G3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ689G3
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
FAB 14C10
D, E
230Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEMAN
RECONSTRUCTIONMPSA

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-10-16
    Type: Initial release
  • Version 1.1: 2017-08-23
    Changes: Data collection
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references, Derived calculations, Refinement description