4BM5 | pdb_00004bm5

Chloroplast inner membrane protein TIC110


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free: 
    0.366 (Depositor), 0.393 (DCC) 
  • R-Value Work: 
    0.350 (Depositor), 0.382 (DCC) 
  • R-Value Observed: 
    0.350 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structural Characterizations of Chloroplast Translocon Protein Tic110.

Tsai, J.-Y.Chu, C.-C.Yeh, Y.-H.Chen, L.-J.Li, H.-M.Hsiao, C.-D.

(2013) Plant J 75: 847

  • DOI: https://doi.org/10.1111/tpj.12249
  • Primary Citation Related Structures: 
    4BM5

  • PubMed Abstract: 

    Tic110 is a major component of the chloroplast protein import translocon. Two functions with mutually exclusive structures have been proposed for Tic110: a protein-conducting channel with six transmembrane domains and a scaffold with two N-terminal transmembrane domains followed by a large soluble domain for binding transit peptides and other stromal translocon components. To investigate the structure of Tic110, Tic110 from Cyanidioschyzon merolae (CmTic110) was characterized. We constructed three fragments, CmTic110A , CmTic110B and CmTic110C , with increasing N-terminal truncations, to perform small-angle X-ray scattering (SAXS) and X-ray crystallography analyses and Dali structural comparison. Here we report the molecular envelope of CmTic110B and CmTic110C determined by SAXS, and the crystal structure of CmTic110C at 4.2 Å. Our data indicate that the C-terminal half of CmTic110 possesses a rod-shaped helix-repeat structure that is too flattened and elongated to be a channel. The structure is most similar to the HEAT-repeat motif that functions as scaffolds for protein-protein interactions.


  • Organizational Affiliation
    • Institute of Molecular Biology, Academia Sinica, Taipei, 11529, Taiwan.

Macromolecule Content 

  • Total Structure Weight: 39.47 kDa 
  • Atom Count: 1,350 
  • Modeled Residue Count: 268 
  • Deposited Residue Count: 348 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SIMILAR TO CHLOROPLAST INNER MEMBRANE PROTEIN TIC110348Cyanidioschyzon merolaeMutation(s): 0 
UniProt
Find proteins for M1V6H9 (Cyanidioschyzon merolae (strain NIES-3377 / 10D))
Explore M1V6H9 
Go to UniProtKB:  M1V6H9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM1V6H9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free:  0.366 (Depositor), 0.393 (DCC) 
  • R-Value Work:  0.350 (Depositor), 0.382 (DCC) 
  • R-Value Observed: 0.350 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.1α = 90
b = 121.1β = 90
c = 242.4γ = 120
Software Package:
Software NamePurpose
CNSrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-06-12
    Type: Initial release
  • Version 1.1: 2013-09-25
    Changes: Database references
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references, Other