4BC6 | pdb_00004bc6

Crystal structure of human serine threonine kinase-10 bound to novel Bosutinib Isoform 1, previously thought to be Bosutinib

PDB DOI: https://doi.org/10.2210/pdb4BC6/pdb
Entry: 4BC6 supersedes: 3ZZ2

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-10-01 Released: 2012-10-10
Deposition Author(s): Vollmar, M., Szklarz, M., Chaikuad, A., Elkins, J., Savitsky, P., Azeez, K.A., Salah, E., Krojer, T., Canning, P., Muniz, J.R.C., Bountra, C., Arrowsmith, C.H., von Delft, F., Weigelt, J., Edwards, A., Knapp, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.254 (Depositor), 0.281 (DCC)
R-Value Work:
0.211 (Depositor), 0.233 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Human Serine Threonine Kinase- 10 Bound to Novel Bosutinib Isoform 1, Previously Thought to be Bosutinib

Vollmar, M., Szklarz, M., Chaikuad, A., Elkins, J., Savitsky, P., Azeez, K.A., Salah, E., Krojer, T., Canning, P., Muniz, J.R.C., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., von Delft, F., Knapp, S.

To be published.

Macromolecule Content

Total Structure Weight: 33.72 kDa
Atom Count: 2,190
Modeled Residue Count: 285
Deposited Residue Count: 293
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SERINE/THREONINE-PROTEIN KINASE 10	A	293	Homo sapiens	Mutation(s): 0 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for O94804 (Homo sapiens) Explore O94804 Go to UniProtKB: O94804
PHAROS: O94804 GTEx: ENSG00000072786
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O94804
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
XZN Query on XZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	4-[(3,5-DICHLORO-4-METHOXYPHENYL)AMINO]-6-METHOXY-7-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3-CARBONITRILE C₂₆ H₂₉ Cl₂ N₅ O₃ YCLIWTLPTXAGPQ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.254 (Depositor), 0.281 (DCC)
R-Value Work: 0.211 (Depositor), 0.233 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.17	α = 90
b = 114.03	β = 90
c = 134.34	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2012-10-10

Deposition Author(s):

This entry supersedes: 3ZZ2

Revision History (Full details and data files)

Version 1.0: 2012-10-10
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references, Structure summary
Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description