47GC | pdb_000047gc

Crystal structure of HAase

• PDB DOI: https://doi.org/10.2210/pdb47GC/pdb

• Classification: HYDROLASE
• Organism(s): Odontomachus monticola
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 2026-10-21 Released: 2026-11-11 
• Deposition Author(s): Wang, H., Feng, H.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.242 (Depositor), 0.241 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.189 (Depositor) 

Starting Model: in silico

Literature

Crystal structure of HAase

Wang, H., Feng, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 40.08 kDa 
• Atom Count: 2,796 
• Modeled Residue Count: 322 
• Deposited Residue Count: 339 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hyaluronidase OM	A	339	Odontomachus monticola	Mutation(s): 0  EC: 3.2.1.35
UniProt
Find proteins for A0A348G5W8 (Odontomachus monticola) Explore A0A348G5W8  Go to UniProtKB:  A0A348G5W8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.242 (Depositor), 0.241 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.009	α = 90
b = 89.009	β = 90
c = 90.02	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-11-11 
Deposition Author(s): Wang, H., Feng, H.

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Funding Organization	Location	Grant Number
Other private	China	--

Revision History  

• Version 1.0: 2026-11-11
  Type: Initial release