43DY | pdb_000043dy

In situ structure of mouse urate oxidase assembly with helical symmetry applied

PDB DOI: https://doi.org/10.2210/pdb43DY/pdb
EM Map EMD-81807: EMDB EMDataResource

Classification: OXIDOREDUCTASE
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2026-06-27 Released: 2026-07-15
Deposition Author(s): Yang, J.H., Chen, Z., Guo, Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A conserved supramolecular architecture of urate oxidase organizes metabolism in peroxisomes

Yang, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 800.62 kDa
Atom Count: 56,352
Modeled Residue Count: 6,888
Deposited Residue Count: 6,888
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uricase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	287	Mus musculus	Mutation(s): 0 EC: 1.7.3.3
UniProt & NIH Common Fund Data Resources
Find proteins for P25688 (Mus musculus) Explore P25688 Go to UniProtKB: P25688
IMPC: MGI:98907
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P25688
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
URC (Subject of Investigation/LOI) Query on URC Download:Ideal Coordinates CCD File SDF format, chain BA [auth C] SDF format, chain FA [auth G] SDF format, chain GA [auth I] SDF format, chain JA [auth K] SDF format, chain LA [auth N] SDF format, chain NA [auth O] SDF format, chain RA [auth S] SDF format, chain VA [auth W] SDF format, chain Z [auth B] SDF format, chain Y [auth A] SDF format, chain UA [auth W] SDF format, chain TA [auth V] SDF format, chain SA [auth U] SDF format, chain QA [auth S] SDF format, chain PA [auth R] SDF format, chain OA [auth Q] SDF format, chain MA [auth O] SDF format, chain KA [auth M] SDF format, chain IA [auth K] SDF format, chain HA [auth J] SDF format, chain EA [auth G] SDF format, chain DA [auth F] SDF format, chain CA [auth E] SDF format, chain AA [auth C] MOL2 format, chain BA [auth C] MOL2 format, chain FA [auth G] MOL2 format, chain GA [auth I] MOL2 format, chain JA [auth K] MOL2 format, chain LA [auth N] MOL2 format, chain NA [auth O] MOL2 format, chain RA [auth S] MOL2 format, chain VA [auth W] MOL2 format, chain Z [auth B] MOL2 format, chain Y [auth A] MOL2 format, chain UA [auth W] MOL2 format, chain TA [auth V] MOL2 format, chain SA [auth U] MOL2 format, chain QA [auth S] MOL2 format, chain PA [auth R] MOL2 format, chain OA [auth Q] MOL2 format, chain MA [auth O] MOL2 format, chain KA [auth M] MOL2 format, chain IA [auth K] MOL2 format, chain HA [auth J] MOL2 format, chain EA [auth G] MOL2 format, chain DA [auth F] MOL2 format, chain CA [auth E] MOL2 format, chain AA [auth C] mmCIF format, chain BA [auth C] mmCIF format, chain FA [auth G] mmCIF format, chain GA [auth I] mmCIF format, chain JA [auth K] mmCIF format, chain LA [auth N] mmCIF format, chain NA [auth O] mmCIF format, chain RA [auth S] mmCIF format, chain VA [auth W] mmCIF format, chain Z [auth B] mmCIF format, chain Y [auth A] mmCIF format, chain UA [auth W] mmCIF format, chain TA [auth V] mmCIF format, chain SA [auth U] mmCIF format, chain QA [auth S] mmCIF format, chain PA [auth R] mmCIF format, chain OA [auth Q] mmCIF format, chain MA [auth O] mmCIF format, chain KA [auth M] mmCIF format, chain IA [auth K] mmCIF format, chain HA [auth J] mmCIF format, chain EA [auth G] mmCIF format, chain DA [auth F] mmCIF format, chain CA [auth E] mmCIF format, chain AA [auth C]	AA [auth C] BA [auth C] CA [auth E] DA [auth F] EA [auth G] AA [auth C], BA [auth C], CA [auth E], DA [auth F], EA [auth G], FA [auth G], GA [auth I], HA [auth J], IA [auth K], JA [auth K], KA [auth M], LA [auth N], MA [auth O], NA [auth O], OA [auth Q], PA [auth R], QA [auth S], RA [auth S], SA [auth U], TA [auth V], UA [auth W], VA [auth W], Y [auth A], Z [auth B]	URIC ACID C₅ H₄ N₄ O₃ LEHOTFFKMJEONL-UHFFFAOYSA-N		Interactions Focus chain AA [auth C] Focus chain BA [auth C] Focus chain CA [auth E] Focus chain DA [auth F] Focus chain EA [auth G] Focus chain FA [auth G] Focus chain GA [auth I] Focus chain HA [auth J] Focus chain IA [auth K] Focus chain JA [auth K] Focus chain KA [auth M] Focus chain LA [auth N] Focus chain MA [auth O] Focus chain NA [auth O] Focus chain OA [auth Q] Focus chain PA [auth R] Focus chain QA [auth S] Focus chain RA [auth S] Focus chain SA [auth U] Focus chain TA [auth V] Focus chain UA [auth W] Focus chain VA [auth W] Focus chain Y [auth A] Focus chain Z [auth B] Interactions & Density Focus chain AA [auth C] Focus chain BA [auth C] Focus chain CA [auth E] Focus chain DA [auth F] Focus chain EA [auth G] Focus chain FA [auth G] Focus chain GA [auth I] Focus chain HA [auth J] Focus chain IA [auth K] Focus chain JA [auth K] Focus chain KA [auth M] Focus chain LA [auth N] Focus chain MA [auth O] Focus chain NA [auth O] Focus chain OA [auth Q] Focus chain PA [auth R] Focus chain QA [auth S] Focus chain RA [auth S] Focus chain SA [auth U] Focus chain TA [auth V] Focus chain UA [auth W] Focus chain VA [auth W] Focus chain Y [auth A] Focus chain Z [auth B]