Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
Sugahara, M., Ago, H., Saino, H., Miyano, M., Kurahashi, Y., Aoyama, S., Takehira, M., Yutani, K., Yamamoto, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mAb Fab H fragment | 218 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mAb Fab L fragment | 217 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ON5 Query on ON5 | C [auth A] | (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid C20 H33 Cl O4 RDZUDQFNGNUIKH-JZFBHDEDSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.66 | α = 90 |
b = 82.31 | β = 90 |
c = 82.56 | γ = 90 |
Software Name | Purpose |
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BSS | data collection |
MOLREP | phasing |
PHENIX | refinement |
MOSFLM | data reduction |
SCALA | data scaling |